![]() ![]() For the 20 most studied species, we also manually collected a Our gene ID mapping and pathwayĭata are mostly derived from these two sources. Overlapping terms/pathways, protein-protein interaction networks, gene characterristics plots, and enriched promoter motifs.Īll query genes are first converted to ENSEMBL gene IDs or STRING-db protein IDs. KEGG pathway diagrams with your genes highlighted, hierarchical clustering trees and networks summarizing (including bacteria and fungi) are annotated based on STRING-db (v.11). Just paste your gene list to get enriched GO terms and othe pathways for over 420 plant and animal species,īased on annotation from Ensembl, Ensembl plants and Ensembl Metazoa. A graphical tool for gene enrichment analysis To request to add a new species/genome, fill in thisįorm. Its database includes several custom genomes requested by users. 11, 2022: Like ShinyGO but your genome is not covered? If this server is busy, please use a mirror severįor questions, suggestions or data contributions.įeb. Such as G:profiler, Enrichr, STRING-db, and DAVID. Please always double check your results with other tools Pasted Ensembl gene IDs to ShinyGO 0.76 between Apand Jan. Without funding, ShinyGO might 19, 2023: Thanks to a user's feedback, we found a serious bugĪs some genes are represented by multiple gene IDs in Ensebml, they are counted more ![]() Also include anyįeatures requests such as multiple gene sets. If you briefly state your general research area and how ShinyGOįacilitates your work, including major findings, We are working on a grant proposal (deadline June 5th) to redevelop, We also included 14,094 species from STRING-DB 11.5. Thanks to Jenny's hardwork, we update to Ensembl releaseġ07 which includes 620 species: 215 main, 177 metazoa, 124 plants, 33 protists and 1 bacteria. ![]()
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